PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 344aa    MW: 36962.9 Da    PI: 8.1493
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.83.1e-4351126176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC+adl+ ak y+ rhkvC +hskap+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  GSMUA_Achr8P25550_001  51 RCQVEGCNADLTGAKAYYCRHKVCGMHSKAPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 126
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.7E-3644113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.47949126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-4150130IPR004333Transcription factor, SBP-box
PfamPF031103.0E-3352125IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDSSSLKASG ASSGSGDALH GLKFGQKIYF EDGGGGKGKG VAQGGQQQPP RCQVEGCNAD  60
LTGAKAYYCR HKVCGMHSKA PKVIVAGLEQ RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN  120
ERRRKPPPGP FGTRYGRIAS SFHEDPNRFR SFLVDFSYPN FSCAARDVWP TARTGDRMAN  180
NEWRGVLDAP SHAAALHGTH PCFQGPPVGA FCSPMELPPG ECLAGVSDSS CALSLLSTDP  240
WSSNSAGNRS PVIPASSTFD GQPTTHSVIP SNYFNSSWGT RGHGARISSH EIQHEMGLAG  300
GTTNVSDAHF TGQVEFAPQE NGHCLDHGSD RAYDHSGPGM QWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-31521251184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415426.10.0PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
SwissprotA3C0572e-91SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLM0TTK80.0M0TTK8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-53squamosa promoter binding protein-like 9