PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P26240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 172aa MW: 19310.3 Da PI: 8.2214

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P26240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.2e-31	92	150	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K vk+s++pr+YYrC+s+gC+vkkkver ++d ++v++tYeg+Hnh+ GSMUA_Achr8P26240_001 92 LDDGYKWRKYGKKAVKSSPNPRNYYRCSSEGCQVKKKVERHRDDSSFVITTYEGTHNHH 150 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-33	80	152	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-28	85	152	IPR003657	WRKY domain
PROSITE profile	PS50811	32.122	87	152	IPR003657	WRKY domain
SMART	SM00774	9.2E-35	92	151	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	93	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MPSNSSENAL PEDGVFEVDD YLTFADDGHE EASLSHPSVH RYPLVQAADC AANKTKITDC 60 NKQVSKDAGK RSSKRSSSFK VAFKTKSELE ILDDGYKWRK YGKKAVKSSP NPRNYYRCSS 120 EGCQVKKKVE RHRDDSSFVI TTYEGTHNHH APYPAVTQHR AVETPNSHDL SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-26	76	152	1	77	Probable WRKY transcription factor 4
2lex_A	9e-26	76	152	1	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415342.1	1e-111	PREDICTED: probable WRKY transcription factor 75
TrEMBL	M0TTS7	1e-125	M0TTS7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P26240_001	1e-126	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	6e-35	WRKY DNA-binding protein 50