PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P26280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 463aa    MW: 50701.1 Da    PI: 7.6137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P26280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13303349455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr8P26280_001 303 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 349
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-4236195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-19302362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-15302353No hitNo description
Gene3DG3DSA:4.10.280.107.5E-19303362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10303349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAVAVLGRQG FDYLNAHQES SSDGHLTAVG GSDADLQNNL QDVVEGQTST WAYAIFWQIS  60
RSESGDFVLG WGDGYCRDLG DWEEEGGGGA RSHPIDAAHQ KMRKRMYFLA SMYFSFPKGE  120
NPPGMALASG KHIWISEAGL TSPACGNYCV RAFLARSAGF RTIVFLPFDA GVLELGSVDP  180
VPESFEAVQR IRAIFGRGLD KKAAAAAAVD KIGENNDPKN PPAAGGTTLQ WNQNHIVNAH  240
QKKFANGAAY VGHARGVVGE NPPRPANRFR PQELPPQRQQ LKSLPPPRKR GRKPANGREE  300
PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AISYITELQQ RLKEMEAERE  360
MCGDSSSLLD CKPKSHCPEI DVQAAQDEVI VRVSCPSETH PISKVIQAFR ESQVNVVDST  420
VAASNDSVLH TFVVKSPGTE QLTKEKLITA LTHDGARMPP ADR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-28297359264Transcription factor MYC2
5gnj_B8e-28297359264Transcription factor MYC2
5gnj_E8e-28297359264Transcription factor MYC2
5gnj_F8e-28297359264Transcription factor MYC2
5gnj_G8e-28297359264Transcription factor MYC2
5gnj_I8e-28297359264Transcription factor MYC2
5gnj_M8e-28297359264Transcription factor MYC2
5gnj_N8e-28297359264Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415334.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLM0TTT10.0M0TTT1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P26280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-85bHLH family protein