PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P26460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 332aa    MW: 36989.9 Da    PI: 7.4704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P26460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.7e-13155202355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ ++f eL  ++P +     kK++Ka++L  A++Y+k+Lq
  GSMUA_Achr8P26460_001 155 QEHIMAERKRREKLSQRFIELSAVVPDL-----KKMDKASVLGDAIKYLKQLQ 202
                            5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17155221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-12157205No hitNo description
SMARTSM003534.8E-15158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEALASPCYS DMGMDQSFLN QWELTNLDQF GTQQLELALG QDLERSPSSE SYTSYSSFHP  60
PASTERAKKL IKTSSWSSCT TDKNSAALSD ASCPRILSFG NPESPLCHSN LSHAVTMKKK  120
EETDVSIPSK RNYGAMSGDG TKRANAGARP ASHNQEHIMA ERKRREKLSQ RFIELSAVVP  180
DLKKMDKASV LGDAIKYLKQ LQEKVTSLQD QVTQRNVESA VLVKKSQLCA NDDSSSSDEN  240
FDESLPEIEA RVCDKTILIK IHCENRKGIL VKALSEIEKL HLSVTNTSVM PFTSSSLDIT  300
VMTQARFFKP LEFSMTAKDL VKKLNSVFRE FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14157214966Transcription factor MYC2
5gnj_B2e-14157214966Transcription factor MYC2
5gnj_E2e-14157214966Transcription factor MYC2
5gnj_F2e-14157214966Transcription factor MYC2
5gnj_G2e-14157214966Transcription factor MYC2
5gnj_I2e-14157214966Transcription factor MYC2
5gnj_M2e-14157214966Transcription factor MYC2
5gnj_N2e-14157214966Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415320.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_018685198.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0729e-58BH025_ARATH; Transcription factor bHLH25
TrEMBLM0TTU90.0M0TTU9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P26460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-55bHLH family protein