PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P26600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

YABBY

Protein Properties

Length: 167aa MW: 18990.9 Da PI: 9.8385

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P26600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	182	3.3e-56	4	159	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 + +eqvCyv+C+fCnt+l+v++P + +f++vtvrCG C+++l vnl+ + +l+ ++ ++++ +++l++ ++++ GSMUA_Achr8P26600_001 4 HVLPEQVCYVNCSFCNTVLVVNIPGNNSFSIVTVRCGLCANILYVNLEGLHGVLPLQNF----------QNHNLGSQHLHMDFGSSSN 81 5689*************************************************9995..........6666677777777777777 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ ++ +++ + ekr r+Psaynrfikeei+r+k++nP+ish+eafs aaknWahfP+ih+gl GSMUA_Achr8P26600_001 82 CTRLSVMNPVDYVQQQMQLIHRKLFSATEKR-RAPSAYNRFIKEEIRRLKTKNPNISHKEAFSRAAKNWAHFPEIHMGL 159 7777777777766666666556788899998.9*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.0E-59	7	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.13E-7	107	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-5	111	154	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MSNHVLPEQV CYVNCSFCNT VLVVNIPGNN SFSIVTVRCG LCANILYVNL EGLHGVLPLQ 60 NFQNHNLGSQ HLHMDFGSSS NCTRLSVMNP VDYVQQQMQL IHRKLFSATE KRRAPSAYNR 120 FIKEEIRRLK TKNPNISHKE AFSRAAKNWA HFPEIHMGLT IKGNKQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685796.1	1e-115	PREDICTED: protein YABBY 2-like
Swissprot	Q10FZ7	3e-48	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	M0TTW3	1e-121	M0TTW3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P26600_001	1e-122	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-46	YABBY family protein