PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P27210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 1909aa MW: 214834 Da PI: 5.1277

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P27210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.9	2.7e-16	3	52	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+ ++ + yps++ r+eL+ k+gL++rq ++WF+ rR k++k GSMUA_Achr8P27210_001 3 TPYQLEILEKTYAVEAYPSETLRAELSVKTGLSDRQLQMWFCHRRLKDRK 52 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.56	1	53	IPR001356	Homeobox domain
SMART	SM00389	2.1E-7	1	57	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-13	2	52	IPR009057	Homeodomain-like
CDD	cd00086	1.53E-12	2	52	No hit	No description
Pfam	PF00046	5.8E-14	3	52	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-14	3	52	IPR009057	Homeodomain-like
SMART	SM00571	2.2E-20	547	606	IPR018501	DDT domain
PROSITE profile	PS50827	16.802	547	606	IPR018501	DDT domain
Pfam	PF02791	9.5E-18	550	603	IPR018501	DDT domain
Pfam	PF05066	8.1E-16	729	797	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.2E-9	950	993	IPR028942	WHIM1 domain
Pfam	PF15613	3.4E-13	1124	1326	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1909 aa Download sequence Send to blast
MKTPYQLEIL EKTYAVEAYP SETLRAELSV KTGLSDRQLQ MWFCHRRLKD RKFPPTRRQR 60 RDDDSLPLTP PPPVLPPPND MLSSESGGVG LSSSPFNMSA LGRRYYDPQG LLPAPPNQLT 120 MGELRILASV EAQLGEPLRQ DGPVLGVEFD PLPPGAFGAP IEMPAQQNQT VRPYDGNMFE 180 RHDAKTMKGP SFLCSMEHLL SSSSNGKRKT TAGGSHIIHP QMGSRALHEY QFLPEQPSVR 240 SEAYDRISQS HYYDSPVDVS STRVTSLPSG GKSLHGNDQE APSYTFQGQM SSASLLSHQG 300 RQQTIPSIST DCDSTHSNSF QVPASDTQFG THQAMGLENP YLSSDRRILR DEDFSRLERK 360 RKCDEARIAK EVEAHEKRIR KELEKQDVLR RKREEQMRRE MERHDRERRK EEERMMREKQ 420 REEERFQREQ RRENERREKF LLKESRRAEK LRQKEELRRE KEAARLKAAT ERATARRIAR 480 EYMELIEDER LELMELATAR KGFSSIFALD SDTLQQLDSF KSMLSAFPPS SVRLKRPFAV 540 QPWADSDVNI ANLLMVWKFL ITFADVLGLW PFTLDEFVQA LHDYDSRLLG EIHVALLKSI 600 IKDIEDVART PAMTLGASQS STANPGGGHP HIIEGAYAWG FNIRSWQRHL NYLTWPEILR 660 QFALSAGFGP QLKKRNVERV CFPDEHEGND GEDIISILRN GSAAESAAAL MQERGYTHRR 720 RSRHRLTPGT VKFAAFHVLS LEGSRGLTIL EVADKIQKSG LRDLTTSKTP EASIAAALSR 780 DTKLFERTAP STYCVRSPYR KDPAEADAVL SAAREKIQVF QSALSDSEGA EKDTEDADDA 840 ERDEDSEGDA ADDPEVDDAS IDAKLDKDDP FTSELKDSKA STLLGKETGG EIGVIPQTNF 900 GNVEKGPTIP SENSRTASTS HASQLPDANS NFHEENNTDM EETEIDENNF GEPWVQGLSE 960 SDYYELSVEE RINALVALIG VAIEGNSIRV VLEERLEAAS ALKKQMWAEA QLDKRRFREE 1020 YSSRLQSAAF GGYKAETALT NGAREESQTP LDNVDKSNDG NLEAINNERF LEQNQVNYGN 1080 MSVGQELTCA DVLPVQHYGY ATERSRSQLK SFIGHKAEQL YVYRSLPLGQ DRRRNRYWQF 1140 STSSSPNDPG SGRIFFESKD GHWRLIDSEE EAPSFTHVLE PCSPYVIWLI EYPYVFTRIK 1200 NINMFLMVNT MIVCKPHPDS SAATITVMLF LHPFFLSWYS VLVTGIAELV AQLCLPSIIN 1260 RVTCVNFPPV CEELCENVHG NQKVHKDDII SLNFREESRC EVFDALLAAL DTRGIRESHL 1320 HSMLQRVETT FKEAIRRSKK SFNSAVSVGD HVKIGVPKMM VSPDCSMELD SPSSTLCGLA 1380 SDALEKSTSF KIELGRNEVE KTAALKRYEG FLRWMWKECY NPYMLCAMKY GKKRCSELLH 1440 TCNSCFQSFL AEERHCPFCH KTFKAFHNSD AILSEHVALC ETKRKSDPDW KPQLSDSTLP 1500 IGIRLLKAQL SMIEVSIPAE ALQAFWTEGY RKSWAVKLHS SSSAEELFQI LTLLESAIKQ 1560 DFLSSNFETT TELLSSTARV ASEIIAAHSG SIPVLPWVPD TSAAVALRLL DLDSSISYML 1620 QQKLEYHKEK EGDYIKLPSR YAVVNNMQEV EPMGTPDQLD YHNDGRWLDT GSGYRGRGRG 1680 SRGRGGRGRG RGGRGLRGSG SSSRVEFRTD NIGSFEKATR KYTRRGRTRG RGRRRGRRTI 1740 RPRQRSDNRV ATIDKRSLLG SFITADSSSN QARIEESPAS SGGEEWGLGE DAGKTYVEED 1800 DNSAGFESDE NGRASGDEYD DQAADSARDD YDEGKSTGLI DDETEEEDGG DMVDEEGEED 1860 DVGGGHDLDA YMDDDDDDEM RDNPEDVGDA EGNGDEDEGA SSFSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1909 aa Download sequence Send to blast

MKTPYQLEIL EKTYAVEAYP SETLRAELSV KTGLSDRQLQ MWFCHRRLKD RKFPPTRRQR  60
RDDDSLPLTP PPPVLPPPND MLSSESGGVG LSSSPFNMSA LGRRYYDPQG LLPAPPNQLT  120
MGELRILASV EAQLGEPLRQ DGPVLGVEFD PLPPGAFGAP IEMPAQQNQT VRPYDGNMFE  180
RHDAKTMKGP SFLCSMEHLL SSSSNGKRKT TAGGSHIIHP QMGSRALHEY QFLPEQPSVR  240
SEAYDRISQS HYYDSPVDVS STRVTSLPSG GKSLHGNDQE APSYTFQGQM SSASLLSHQG  300
RQQTIPSIST DCDSTHSNSF QVPASDTQFG THQAMGLENP YLSSDRRILR DEDFSRLERK  360
RKCDEARIAK EVEAHEKRIR KELEKQDVLR RKREEQMRRE MERHDRERRK EEERMMREKQ  420
REEERFQREQ RRENERREKF LLKESRRAEK LRQKEELRRE KEAARLKAAT ERATARRIAR  480
EYMELIEDER LELMELATAR KGFSSIFALD SDTLQQLDSF KSMLSAFPPS SVRLKRPFAV  540
QPWADSDVNI ANLLMVWKFL ITFADVLGLW PFTLDEFVQA LHDYDSRLLG EIHVALLKSI  600
IKDIEDVART PAMTLGASQS STANPGGGHP HIIEGAYAWG FNIRSWQRHL NYLTWPEILR  660
QFALSAGFGP QLKKRNVERV CFPDEHEGND GEDIISILRN GSAAESAAAL MQERGYTHRR  720
RSRHRLTPGT VKFAAFHVLS LEGSRGLTIL EVADKIQKSG LRDLTTSKTP EASIAAALSR  780
DTKLFERTAP STYCVRSPYR KDPAEADAVL SAAREKIQVF QSALSDSEGA EKDTEDADDA  840
ERDEDSEGDA ADDPEVDDAS IDAKLDKDDP FTSELKDSKA STLLGKETGG EIGVIPQTNF  900
GNVEKGPTIP SENSRTASTS HASQLPDANS NFHEENNTDM EETEIDENNF GEPWVQGLSE  960
SDYYELSVEE RINALVALIG VAIEGNSIRV VLEERLEAAS ALKKQMWAEA QLDKRRFREE  1020
YSSRLQSAAF GGYKAETALT NGAREESQTP LDNVDKSNDG NLEAINNERF LEQNQVNYGN  1080
MSVGQELTCA DVLPVQHYGY ATERSRSQLK SFIGHKAEQL YVYRSLPLGQ DRRRNRYWQF  1140
STSSSPNDPG SGRIFFESKD GHWRLIDSEE EAPSFTHVLE PCSPYVIWLI EYPYVFTRIK  1200
NINMFLMVNT MIVCKPHPDS SAATITVMLF LHPFFLSWYS VLVTGIAELV AQLCLPSIIN  1260
RVTCVNFPPV CEELCENVHG NQKVHKDDII SLNFREESRC EVFDALLAAL DTRGIRESHL  1320
HSMLQRVETT FKEAIRRSKK SFNSAVSVGD HVKIGVPKMM VSPDCSMELD SPSSTLCGLA  1380
SDALEKSTSF KIELGRNEVE KTAALKRYEG FLRWMWKECY NPYMLCAMKY GKKRCSELLH  1440
TCNSCFQSFL AEERHCPFCH KTFKAFHNSD AILSEHVALC ETKRKSDPDW KPQLSDSTLP  1500
IGIRLLKAQL SMIEVSIPAE ALQAFWTEGY RKSWAVKLHS SSSAEELFQI LTLLESAIKQ  1560
DFLSSNFETT TELLSSTARV ASEIIAAHSG SIPVLPWVPD TSAAVALRLL DLDSSISYML  1620
QQKLEYHKEK EGDYIKLPSR YAVVNNMQEV EPMGTPDQLD YHNDGRWLDT GSGYRGRGRG  1680
SRGRGGRGRG RGGRGLRGSG SSSRVEFRTD NIGSFEKATR KYTRRGRTRG RGRRRGRRTI  1740
RPRQRSDNRV ATIDKRSLLG SFITADSSSN QARIEESPAS SGGEEWGLGE DAGKTYVEED  1800
DNSAGFESDE NGRASGDEYD DQAADSARDD YDEGKSTGLI DDETEEEDGG DMVDEEGEED  1860
DVGGGHDLDA YMDDDDDDEM RDNPEDVGDA EGNGDEDEGA SSFSSEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1683	1691	RGGRGRGRG
2	1726	1736	RTRGRGRRRGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415250.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	M0TU24	0.0	M0TU24_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P27210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator