PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P27750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 221aa    MW: 25666.3 Da    PI: 10.2193
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P27750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36131051102
                            HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
           HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                            aFl+k+ye+++d+++++++sws ++ sfvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ Fk+
  GSMUA_Achr8P27750_001  13 AFLTKTYEMVDDPTTNSIVSWSLTNASFVVWNQLEFARDLLPRYFKHNNFSSFVRQLNTYGFRKIEPDQ---------WEFANEGFKR 91 
                            69********************888*****************************************999.........********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  89 gkkellekikrkks 102
                            g+++ll++i+r+k 
  GSMUA_Achr8P27750_001  92 GQRHLLNNIHRRKP 105
                            ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.71E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.3E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MESPLASTNS PPAFLTKTYE MVDDPTTNSI VSWSLTNASF VVWNQLEFAR DLLPRYFKHN  60
NFSSFVRQLN TYGFRKIEPD QWEFANEGFK RGQRHLLNNI HRRKPVHSHS LHGQLNSSAP  120
LSDAEKQELE EEIERLKQEK VVLVNELQKQ HTQVQHQMRS LEGRLQALGN RLRAQGRGGC  180
LILIASMRML TSMTIKLQFS SQTFLPCKHL TRSLLRCWNH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-28510311120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415179.11e-123PREDICTED: heat stress transcription factor A-4b-like
SwissprotQ93VB51e-62HFA4D_ORYSJ; Heat stress transcription factor A-4d
SwissprotQ94J166e-63HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLM0TU781e-164M0TU78_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P27750_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.18e-54heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]
  4. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  5. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]