PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P28100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27514.3 Da    PI: 8.6107
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P28100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF947e-30959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELS+LCdaev viifss+g+l+e++s
  GSMUA_Achr8P28100_001  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVGVIIFSSRGRLFEFCS 59
                           79***********************************************96 PP
2K-box95.58.7e-32781735100
                  K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                            s   ++++++++ +q++ kLk+++e Lq++q++llGedL++L+ keL qLe+q+e sl++iRs+K++++++q+++l++ke++l e nk
  GSMUA_Achr8P28100_001  78 SEAMVSSNETQNTYQDYLKLKARVEYLQHSQKNLLGEDLDDLNTKELDQLEEQIEMSLRHIRSTKTQVIIDQLSDLKHKEHMLLESNK 165
                            34448999******************************************************************************** PP

                  K-box  93 aLrkklee 100
                            +Lr+kl+e
  GSMUA_Achr8P28100_001 166 TLRRKLQE 173
                            *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.408161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-31278IPR002100Transcription factor, MADS-box
CDDcd002652.51E-41276No hitNo description
PRINTSPR004041.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2784172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.56887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVGVIIFSS RGRLFEFCSS  60
SSLLKTIERY HRCSYNASEA MVSSNETQNT YQDYLKLKAR VEYLQHSQKN LLGEDLDDLN  120
TKELDQLEEQ IEMSLRHIRS TKTQVIIDQL SDLKHKEHML LESNKTLRRK LQEVSSENLL  180
QLSSQIGASN TVNVPPRPEQ FFQPLACDPS LQIRFNPASA DPSHSQAMAQ NVNGFITGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-25751711101Developmental protein SEPALLATA 3
4ox0_B9e-25751711101Developmental protein SEPALLATA 3
4ox0_C9e-25751711101Developmental protein SEPALLATA 3
4ox0_D9e-25751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8153720.0KC815372.1 Musa acuminata isolate LOF18 sepallata-like MADS box transcription factor LOFSEP (LOFSEP-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415674.21e-179PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR21e-107MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLM0TUB31e-178M0TUB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P28100_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.28e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]