PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P28220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 169aa    MW: 19555.2 Da    PI: 8.3284
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P28220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-261059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rie+++ rqv fskRrngilKKA+EL vLCd+eva+i+fs +gkly ++s
  GSMUA_Achr8P28220_001 10 RIEDNTSRQVCFSKRRNGILKKAKELAVLCDVEVALILFSAKGKLYHFAS 59
                           8***********************************************86 PP
2K-box13.82.4e-061141454273
                  K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnell 73 
                            ++++Ls+++L qLe+ Le  l +  s+K   +
  GSMUA_Achr8P28220_001 114 NISKLSVNDLSQLESVLEGTLAQTTSRKASEM 145
                            6899************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.193161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-35160IPR002100Transcription factor, MADS-box
CDDcd002653.94E-36273No hitNo description
SuperFamilySSF554554.84E-30287IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGRRRVELRR IEDNTSRQVC FSKRRNGILK KAKELAVLCD VEVALILFSA KGKLYHFASP  60
YSIDKIIGRY RHFVDSEREV NEHHSAQGRL KDFSYPRVDC QILEIVQWCL DETNISKLSV  120
NDLSQLESVL EGTLAQTTSR KASEMTLLEE RRFFNLGAEF GDERNSREG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19187179MEF2C
5f28_B7e-19187179MEF2C
5f28_C7e-19187179MEF2C
5f28_D7e-19187179MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415119.11e-117PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
TrEMBLM0TUC51e-121M0TUC5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P28220_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-31MIKC_MADS family protein