PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P28500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 278aa    MW: 30413.3 Da    PI: 8.8369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P28500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-20108156355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+ kl+g
  GSMUA_Achr8P28500_001 108 FRGVRQRH-WGKWVAEIRMPRN---RTRVWLGTFDTAEDAAMAYDMAAYKLRG 156
                            8******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-22106166No hitNo description
SMARTSM003807.0E-38107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-32107165IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-23107165IPR016177DNA-binding domain
PROSITE profilePS5103223.288107164IPR001471AP2/ERF domain
PRINTSPR003676.3E-11108119IPR001471AP2/ERF domain
PfamPF008478.4E-14108156IPR001471AP2/ERF domain
PRINTSPR003676.3E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEDQFPFLRG GIEFNGVKVL PSDLQHSDRS SSSSSVLSFL NPRTPLPSSS SASAAAAAAA  60
SESPNMATFL LQKQRHHESG IAGCLQCSVS CNMIEFCSTR GRRPTKLFRG VRQRHWGKWV  120
AEIRMPRNRT RVWLGTFDTA EDAAMAYDMA AYKLRGDSAY LNFPHLKHDL HELGSPHLHS  180
SVASLLEAKL NALCNSSSSS SSSGSCKQKK AGKDDKSAVA SITRTPRKEG LQSDQGRREI  240
SQQELISRGD AEGVLLSRMP SLDMDMIWDS LPMPAAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20106164160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415091.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ03e-46ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLM0TUF30.0M0TUF3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P28500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-38ERF family protein