PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P29430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 257aa    MW: 27633.5 Da    PI: 8.9867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P29430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001794116123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C ++F ++  L  H++ H
  GSMUA_Achr8P29430_001  94 FPCNYCRRRFYSSQALGGHQNAH 116
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-691121No hitNo description
PROSITE profilePS5015711.26194121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRLILPLHAG HIPCESSSMM EGEGKKSEEK KDDGGAALRP SQHEEQKAKV VFCSSSSSSS  60
LSPTLELNLI ESLVSVPSEP PPAEATTELE PRVFPCNYCR RRFYSSQALG GHQNAHKRER  120
TLAKRGSHGA GFGEANCGYV PSMASLPLRG TYAGRPLGIQ AHSMVHKPHK VTSPPLAAAM  180
FYGQHGWSIS PIISRRPEVG RISTEVIHAT TIPPPVQLND PAAAAAAAAA EMIQEVGGNH  240
LNSRREKLPK LDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414977.20.0PREDICTED: zinc finger protein 1-like isoform X1
TrEMBLM0TUP60.0M0TUP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P29430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-32zinc-finger protein 1