PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 181aa    MW: 19793.8 Da    PI: 4.5817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181767155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++ykGVr +k +g+WvAe+r p++   r r +lg++ tae+Aa+a++aa  +l+g
  GSMUA_Achr8P30520_001 17 PRYKGVRMRK-WGSWVAEVRFPNS---RERLWLGSHPTAEQAARAYDAAVYCLRG 67
                           68******99.**********833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-121767IPR001471AP2/ERF domain
CDDcd000183.51E-241777No hitNo description
SuperFamilySSF541714.97E-191876IPR016177DNA-binding domain
SMARTSM003804.6E-281881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-281876IPR001471AP2/ERF domain
PROSITE profilePS5103221.8251875IPR001471AP2/ERF domain
PRINTSPR003674.5E-81930IPR001471AP2/ERF domain
PRINTSPR003674.5E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEKAATGKQA QSSSSSPRYK GVRMRKWGSW VAEVRFPNSR ERLWLGSHPT AEQAARAYDA  60
AVYCLRGTRA AFNFPDQPPQ IPSAERLSKE EIRAAAMQFA QEEPRRPAGE AQESGGENST  120
EAVGQGKGSS VTTAVEGLMM EDSFVAAGAL PEWWTEEDED AWGAVVASTD DIYSSSPLWN  180
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1418771474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415650.11e-130PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC24e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM0TV041e-128M0TV04_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30520_0011e-129(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]