PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 100aa    MW: 11559.6 Da    PI: 10.9087
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.22.2e-25858252
                 RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                           + +++l+d+++y +lpi++AAkeL++c+T+LK+ CR++G+ RWP+Rkiks+
  GSMUA_Achr8P30670_001  8 TRRLHLKDVANYVHLPITEAAKELQICPTALKKVCRKHGMLRWPYRKIKSI 58
                           67899********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.507180IPR003035RWP-RK domain
PfamPF020421.6E-221158IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MMDQRERTRR LHLKDVANYV HLPITEAAKE LQICPTALKK VCRKHGMLRW PYRKIKSIDR  60
TISNLQRELR SGTAEGATEV EARIERLVAQ RARICAGLPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415647.17e-63PREDICTED: uncharacterized protein LOC103996450
TrEMBLM0TV195e-67M0TV19_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30670_0019e-68(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.12e-15NIN like protein 7