PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 720aa    MW: 78277.1 Da    PI: 6.0628
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.8e-28235288155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  GSMUA_Achr8P30850_001 235 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 288
                            79*******************.********************************8 PP
2Response_reg68.43.1e-23511591109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vdD+ + + +++++l + +y +v+++ +++ al ll+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i++++    + +
  GSMUA_Achr8P30850_001  51 VLLVDDDSTCLAVVERMLLHCQY-DVTTCFEAKRALSLLRENKdaFDMIISDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDTRFNVV 136
                            89*********************.***************988889*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga dflsKp+ +eel +
  GSMUA_Achr8P30850_001 137 MKGVSHGACDFLSKPVRMEELQN 159
                            ********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-3948185No hitNo description
SuperFamilySSF521725.41E-3448187IPR011006CheY-like superfamily
SMARTSM004482.0E-2749161IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.66750165IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2051159IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.18E-2352164No hitNo description
PROSITE profilePS5129411.161232291IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-30232293IPR009057Homeodomain-like
SuperFamilySSF466891.67E-19233292IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-25235288IPR006447Myb domain, plants
PfamPF002496.9E-7237286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MDLAVLRIGD IGGSAKVWES TVRKMSVGSS YASSRLENNR MPDKFPVGMK VLLVDDDSTC  60
LAVVERMLLH CQYDVTTCFE AKRALSLLRE NKDAFDMIIS DVHMPDMDGF KLLELVGLEM  120
DLPVIMMSGD TRFNVVMKGV SHGACDFLSK PVRMEELQNI WQHVVRRKWL DSKEIEHSGS  180
VEEADHNRQV NDDSEYDSTL NDGTDGSWKH RKMKRDAKED DDGDLDNVDP SSSKKPRVVW  240
SVELHQQFVN AVNQLGIDKA VPKRILELMN VPGLTRENVA SHLQKFRLYL KRLSGVAQHH  300
TGLNNSLCGS SSNAKVGQLG RLDFQTLAVS GQIPPQTLAA LQDELLGHPS HSFAMQTTNL  360
PVPQQASVQG TNCVTFECGI AFGQPSLKGQ AVSSLPVWST NDPGAVGSAS NLGRLNTRNN  420
NMLVTMLQQP QPQTVISDSN RAIKMQPSCL VTPRKSSSNF QVQGNPMLLN QDFVVPSQSS  480
TNYQGGNTVV PVIQDSVVVT SQSSTSLKAG NNHFITNHRS SIFPSQSLTG FSLGNDTGLL  540
NQVSILPPSQ TSNSFQAGTK SFHSNQNSMV VPSQLSSTLQ TEKSIMPVTV NYNPLPTQSD  600
IMPSSMGQVL DGGFENLAAV DGYSVPISMV PEALSSTSSS TTTDTQLGKF PEKGQCRSLG  660
FVGKGTCLPS RFAVDDIESP TNDLTNTSTY TGDDGFVLNQ DIFGINGAFQ SGHCASTSFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22231294164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414786.10.0PREDICTED: two-component response regulator ORR21-like isoform X1
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLM0TV370.0M0TV37_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-115response regulator 2