PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P30950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 530aa    MW: 58864.3 Da    PI: 5.4885
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P30950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.53.2e-1011365293374
                   GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsP 89 
                            +lL+ecA+av+++d +++q+l++ l+el+sp+gd+ q+laayf+++  arl++s++++ ++l++ ++++  s +++  + l f+e+sP
  GSMUA_Achr8P30950_001 136 QLLIECARAVAARDSHRVQQLMWMLNELSSPYGDTEQKLAAYFLQGFFARLTSSGPRTLRTLSAASDRNC-SFDSTRRTALrFQELSP 222
                            89************************************************************99888744.44444444446****** PP

                   GRAS  90 ilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfA 169
                            +  f+h++aN aIlea+       +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+ ++s     ++ ++e+g+r++kfA
  GSMUA_Achr8P30950_001 223 WSSFGHVAANGAILEAFLDPssasQRLHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVWSASPstaVQTVMREIGQRMEKFA 310
                            ****************976555669**************************889********986554456699************** PP

                   GRAS 170 eelgvpfefnvlvak.rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse... 251
                            + +gvpf+fnv+++  +l+dl+l++L++++    +laVn++ +lh +     + + +r++++ ++++l+P++v+vve+ead++++   
  GSMUA_Achr8P30950_001 311 RLMGVPFRFNVVHHAgDLSDLDLDTLDLREgdSSSLAVNCINALHGVS----PANRRRETLIAAIRRLQPRIVTVVEEEADLEGGggg 394
                            ***********97767**************66678************8....66667899*********************9655589 PP

                   GRAS 252 .......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                    F++ f e+l+++sa f+sle+++pr+s+er  +Ere  gr++v++vac  ae+ er+ t++ W++r+++aGF p+++se+
  GSMUA_Achr8P30950_001 395 ggeeegeAFFKVFKESLRFFSAYFESLEESFPRTSNERLALERE-AGRSVVDLVACPAAESAERRDTAAGWSRRMRSAGFAPAAFSED 481
                            9999999*************************************.******************************************* PP

                   GRAS 333 aakqaklllrkvksdgyrve......ee.sgslvlgWkdrpLvsvSaWr 374
                            +a+++++llr++k +g+++       e+ s+ ++l Wk++p+v++SaW+
  GSMUA_Achr8P30950_001 482 VADDVRALLRRYK-EGWTMRptaedsEDaSAGIFLEWKEKPVVWASAWK 529
                            *************.77777766655422477888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.143108503IPR005202Transcription factor GRAS
PfamPF035141.1E-98136529IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDTLFRLFGP QSSRDLSRNS SSSRSSEPHQ IHYQHSFLHQ NSFARQQEVE FYREECGTEH  60
HLYMDEDFSS SSSSKHFQNP HQPPSTTTTT TTTTPTPTPI FDPADLSLPQ DLNLDFASPS  120
SSSVGASGAG RRWSSQLLIE CARAVAARDS HRVQQLMWML NELSSPYGDT EQKLAAYFLQ  180
GFFARLTSSG PRTLRTLSAA SDRNCSFDST RRTALRFQEL SPWSSFGHVA ANGAILEAFL  240
DPSSASQRLH ILDLSNTFCT QWPTLLEALA TRSADDTPHL SITTVVWSAS PSTAVQTVMR  300
EIGQRMEKFA RLMGVPFRFN VVHHAGDLSD LDLDTLDLRE GDSSSLAVNC INALHGVSPA  360
NRRRETLIAA IRRLQPRIVT VVEEEADLEG GGGGGGEEEG EAFFKVFKES LRFFSAYFES  420
LEESFPRTSN ERLALEREAG RSVVDLVACP AAESAERRDT AAGWSRRMRS AGFAPAAFSE  480
DVADDVRALL RRYKEGWTMR PTAEDSEDAS AGIFLEWKEK PVVWASAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-16610253065474Protein SHORT-ROOT
5b3h_B1e-16710253011420Protein SHORT-ROOT
5b3h_E1e-16710253011420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414777.10.0PREDICTED: protein SHORT-ROOT 1-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLM0TV470.0M0TV47_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P30950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-148GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]