PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P31170_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 209aa MW: 23823.4 Da PI: 8.8121

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P31170_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	53	106	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F +++++ ++ +LA++lgL+ +qV vWFqNrRa++k GSMUA_Achr8P31170_001 53 KKRRLSEEQVKLLEMRFGEEKKLELGRKLRLATELGLDPKQVAVWFQNRRARDK 106 45689***********************************************99 PP
2	HD-ZIP_I/II	110.3	1.4e-35	53	144	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls+eqvklLE+ F ee+kLe rK +la+eLgl+p+qvavWFqnrRAR k+kq+E+ y +Lk ++a + e+++Le+ev +L+ GSMUA_Achr8P31170_001 53 KKRRLSEEQVKLLEMRFGEEKKLELGRKLRLATELGLDPKQVAVWFQNRRARDKSKQVEEAYLKLKPVHEAAVVEKCHLENEVMQLKG 140 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 +l+e GSMUA_Achr8P31170_001 141 KLSE 144 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-16	46	109	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	48	108	IPR001356	Homeobox domain
SMART	SM00389	3.8E-15	51	112	IPR001356	Homeobox domain
CDD	cd00086	5.84E-14	53	109	No hit	No description
Pfam	PF00046	4.4E-15	53	106	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.1E-17	55	113	IPR009057	Homeodomain-like
PRINTS	PR00031	2.6E-5	79	88	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.6E-5	88	104	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MENGGVASES CMIHEEGEMM HFSALSASEL HPQMPRGARR ARRRRKKAKG DAKKRRLSEE 60 QVKLLEMRFG EEKKLELGRK LRLATELGLD PKQVAVWFQN RRARDKSKQV EEAYLKLKPV 120 HEAAVVEKCH LENEVMQLKG KLSEAQEEIR KLSLSMKEAV AGSRPSSSTS SHQPLVADLG 180 VAAEEAELMY IQEFDFGNCM MEWAYFYGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	46	RRARRRRKK
2	41	55	RRRRKKAKGDAKKRR
3	42	55	RRRKKAKGDAKKRR
4	43	56	RRKKAKGDAKKRRL
5	100	108	RRARDKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009414757.1	1e-152	PREDICTED: homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	4e-43	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	M0TV69	1e-150	M0TV69_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P31170_001	1e-151	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	4e-29	homeobox protein 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]