PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P31420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 563aa    MW: 60725.2 Da    PI: 6.6526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P31420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-08193213526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ GtC++Gd C +aHg
  GSMUA_Achr8P31420_001 193 PCPDFRK-GTCRRGDMCEYAHG 213
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002480.0029433IPR002110Ankyrin repeat
PROSITE profilePS500889.778436IPR002110Ankyrin repeat
PROSITE profilePS5029719.8374112IPR020683Ankyrin repeat-containing domain
PfamPF127968.5E-9573IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.29E-14584IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-16584IPR020683Ankyrin repeat-containing domain
CDDcd002041.06E-7685No hitNo description
PROSITE profilePS5008811.5414075IPR002110Ankyrin repeat
SMARTSM002480.00584072IPR002110Ankyrin repeat
SMARTSM003563.1E-6188214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5191215IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5193213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911193215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4221251IPR000571Zinc finger, CCCH-type
SMARTSM0035625223246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MLLQHRTPLM VAATYGSLDV LELLLSLPSS VDVSRADGHD RATALHCAAS GGSPNAADAV  60
KLLLSAGADS NLVDASGHRP ADVVVVPLKV PDVRTVLEEL LGRSSNGTCR DHHHPPELQP  120
PAVVTEKKEY PVDPSLPDIK SSIYATDEFR MYSFKVRPCS RAYSHDWTEC PFVHPGENAR  180
RRDPRKYHYS CVPCPDFRKG TCRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTNCSRRVC  240
FFAHTHEELR PLYMSTGSAV PSSSAAIEMA AAMGLMPGSP SSISTVMHPF TSPLSPSGNG  300
IGHSSLAWAQ PNVPVLHLPG INLKGSRLRT SLSAREMPLD DFSAMPEFDA QQLLNDPSHT  360
CLSPSMGNLM ARPKILAPSN LDDLFSAEIA SSPKYNSDQG AIFSPSHKAA IHSQFQQQQQ  420
QQQGLLSPIN TPASPKSSHL ALLGQQEKQQ QTLRSLSSRD LGSGTSLVFG SSGNSSWSKW  480
ASPSGILDLG VNGEELGRLN QSSSFELQAN GEEPDLSWVH SLVRESPSEE VGTASVAPAW  540
PSGLGPAADG LCSYVTSDRT STL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414744.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLM0TV940.0M0TV94_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P31420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-165CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]