PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P32070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 545aa    MW: 61596.5 Da    PI: 5.497
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P32070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.83.3e-25175228155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  GSMUA_Achr8P32070_001 175 KARVVWSVDLHQKFVNAVDQI-GFDKVGPKKILDLMSVPGLTRENVASHLQKYRL 228
                            68*******************.9*******************************8 PP
2Response_reg80.55.7e-27201281109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vlivdD+p+ +++l+++l+k  y +v++++ +++al++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + +
  GSMUA_Achr8P32070_001  20 VLIVDDDPTWLKILEKMLRKCSY-QVTTCSLATDALHILRERKarFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRV 105
                            8**********************.***************888888**********************6644.8*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga d+l Kp+ ++el++
  GSMUA_Achr8P32070_001 106 MKGVQHGACDYLLKPVRMKELRN 128
                            ********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.5E-4417160No hitNo description
SuperFamilySSF521725.27E-3517140IPR011006CheY-like superfamily
SMARTSM004482.2E-3018130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94819134IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.04E-2821133No hitNo description
PROSITE profilePS512949.393172231IPR017930Myb domain
SuperFamilySSF466899.86E-18172232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27174233IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-23175228IPR006447Myb domain, plants
PfamPF002491.4E-6177227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGNPLPSSRA AEAFPAGLRV LIVDDDPTWL KILEKMLRKC SYQVTTCSLA TDALHILRER  60
KARFDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSIDG ETSRVMKGVQ HGACDYLLKP  120
VRMKELRNIW QHVYRKKMQE HLIDETEMSS MRKRKDVDNK EFVDQELNDP STVKKARVVW  180
SVDLHQKFVN AVDQIGFDKV GPKKILDLMS VPGLTRENVA SHLQKYRLYL SRLQKQNGGT  240
CGGNMQSDHI NKTIKGKFGL KSSTNVQQDW ELTKYACTTE NFQTHGIVAN AAHVSEMNRV  300
APAQVIASKK ALVNDAQLGL FLSFKGMLPS IREKACKPLH DERPVMQLMQ YPEQENYSVL  360
EGYSCLANPD RDHEPCFDHF PSSQPLITSA TCTNGKDMKD LYEMKPLQPA MPPMACTIDS  420
VSIQVKHGLV NLQDTGAICK LEGSPSIEDC YLDETCNQGC FPLTYEVSLK SKSDSDSMLE  480
DLHLYSVQKL SYLENVSCTG TEIYQYIDSV PITEVQRINL CEDSEPSGEY LYDPVDYSID  540
EYLFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17174233463ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134154RKKMQEHLIDETEMSSMRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414674.10.0PREDICTED: two-component response regulator ORR26-like isoform X2
SwissprotQ5N6V81e-167ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLM0TVF90.0M0TVF9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P32070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-108response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]