PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P32130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 422aa MW: 45056.2 Da PI: 9.5973

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P32130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	353	398	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++++P+ +k s +++Le+A+++Ik+Lq GSMUA_Achr8P32130_001 353 SIAERERRTRISKRLRKLQDIVPNM----DKQTSTSDMLELAIQHIKELQ 398 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.253	347	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-15	350	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.58E-12	351	402	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.2E-15	352	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-9	353	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	353	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MGKPFIIRRM PTLPYSSRYS LHCSRTRPLT LSLGSGPTHG IRSRSLIPSF PFYRRIKPLN 60 PSPFLTRSRT FPRGAAMNQS PSGGNKSGSM GPLEGLSRYG SAPGSFLSGL ADSAIAGGGG 120 GGGEPSAVGA GSEGMVGRFF AGESSCPTSE SGCRDSAGGV GGCLQGSYRP GDLHLSAGGS 180 LLVRHSSSPA GFFSHPLTDH GVSTTRVSAN YSQTGTDSIH ASANRRLRSQ WSFSRDSLSQ 240 ISELSIPEIG ENDTCCNSSD EAAGHAGQSY ISGNFQLGSW EDNNSIAFSA PPNKQAKDNA 300 DDMVTGLSNI ASQFSFPRTS SEMSALEKYL QVQQDSVPCR VRAKRGCATH PRSIAERERR 360 TRISKRLRKL QDIVPNMDKQ TSTSDMLELA IQHIKELQSQ VQKLKQEQAN CTCPGKQEKA 420 GE

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MGKPFIIRRM PTLPYSSRYS LHCSRTRPLT LSLGSGPTHG IRSRSLIPSF PFYRRIKPLN  60
PSPFLTRSRT FPRGAAMNQS PSGGNKSGSM GPLEGLSRYG SAPGSFLSGL ADSAIAGGGG  120
GGGEPSAVGA GSEGMVGRFF AGESSCPTSE SGCRDSAGGV GGCLQGSYRP GDLHLSAGGS  180
LLVRHSSSPA GFFSHPLTDH GVSTTRVSAN YSQTGTDSIH ASANRRLRSQ WSFSRDSLSQ  240
ISELSIPEIG ENDTCCNSSD EAAGHAGQSY ISGNFQLGSW EDNNSIAFSA PPNKQAKDNA  300
DDMVTGLSNI ASQFSFPRTS SEMSALEKYL QVQQDSVPCR VRAKRGCATH PRSIAERERR  360
TRISKRLRKL QDIVPNMDKQ TSTSDMLELA IQHIKELQSQ VQKLKQEQAN CTCPGKQEKA  420
GE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009414667.1	0.0	PREDICTED: transcription factor bHLH128 isoform X1
TrEMBL	M0TVG5	0.0	M0TVG5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P32130_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-60	bHLH family protein