PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P32880_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 250aa MW: 27430.6 Da PI: 6.3305

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P32880_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.7	3.3e-35	50	104	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s +tkfCyynnyslsqPryfCk+CrryWt GG+lrnvPvGg++r n+++ GSMUA_Achr8P32880_001 50 RCPRCGSCDTKFCYYNNYSLSQPRYFCKGCRRYWTMGGSLRNVPVGGSSRTNRRR 104 7***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	40	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS51379	7.315	41	72	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain
PROSITE profile	PS50884	27.475	49	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-30	50	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MHMHHQSPTA LKDDVPPSFA PFFPSMSASR HGLAPCAHGR SKPHVELSPR CPRCGSCDTK 60 FCYYNNYSLS QPRYFCKGCR RYWTMGGSLR NVPVGGSSRT NRRRMPSRVS GAPPVAREPS 120 YGHQPQNHGT EGSVDLAALY ATFSSRCPQL EPGLVVPGLP EDIDSVSGSI VDHAECQGSI 180 TEPIGEGFLD QMNQQCLIGE LDPNNTFDTL PSPLEIANYY SSDLSNAPDF VSEANMYPSL 240 DHNFPSSDWC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003270	5e-41	AP003270.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0505D12.
GenBank	AP014957	5e-41	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	5e-41	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	GQ183550	5e-41	GQ183550.1 Oryza sativa Japonica Group Dof-type zinc finger protein 21 gene, partial cds.
GenBank	JN393719	5e-41	JN393719.1 Sorghum bicolor clone Sbdof25 Dof (Dof) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415616.1	0.0	PREDICTED: uncharacterized protein LOC103996417
TrEMBL	M0TVP0	0.0	M0TVP0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P32880_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	2e-33	Dof family protein