PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P33690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 324aa    MW: 36083.5 Da    PI: 7.858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P33690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-093055227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           +++ C +++rtGtC +Gd C+++H++
  GSMUA_Achr8P33690_001 30 GRPDCAYYMRTGTCGFGDGCRYNHPR 55
                           589*********************96 PP
2zf-CCCH246.8e-0877101327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ Cr+f  +G Ck+Gd+Ck+ H++
  GSMUA_Achr8P33690_001  77 RPACRYFVSYGSCKFGDTCKYEHPK 101
                            789********************96 PP
3zf-CCCH352.4e-11121146227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++ rtG+Ck+G +CkF+H++
  GSMUA_Achr8P33690_001 121 GEKECSYYIRTGHCKFGLTCKFNHPE 146
                            7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2062856IPR000571Zinc finger, CCCH-type
SMARTSM003560.00682955IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-73055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-63157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-53456IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-675101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375102IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-677101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-677103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-480100IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521119147IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-8121146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6121149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4125146IPR000571Zinc finger, CCCH-type
SMARTSM0035677274300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGGVNLQCR SMWKMELGSE EPPAYPERHG RPDCAYYMRT GTCGFGDGCR YNHPRDRRMV  60
ARAARTGSEQ HREHTSRPAC RYFVSYGSCK FGDTCKYEHP KPDGSVILAS LNKYGYPLRP  120
GEKECSYYIR TGHCKFGLTC KFNHPEPSLP LPASPSYSIV QPTLSPSHQQ YPVITSWEVG  180
RSSMLPASYM QGPYGPMLLF PGIMPDPGWS TFPVTPSPLI STGGEQNTVL EESQHDSAAQ  240
ISRLHPAHTE SYPMAASVSP STNNQTENVL PERLDEPDCQ DHKRTSYRKL GSRCTSHHRT  300
ENIPPETSCV FSLIGHPLHP FSSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685806.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLM0TVX10.0M0TVX1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P33690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-80C3H family protein