PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P00560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 253aa    MW: 27795.6 Da    PI: 5.9542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P00560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09148195455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN+++  L++l+P +     k +  a +L + ++Y++sLq
  GSMUA_Achr9P00560_001 148 SHSLAERVRRKKINERMRCLQDLVPGC----YKTMGMAGVLDEIINYVQSLQ 195
                            8*************************9....355999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.36E-11142199No hitNo description
SuperFamilySSF474592.62E-16142211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGEFAPILPF VEMDPDLELM RQLAELDGCA TESPSMGLLM DYSDDYYLPH QPYFSVPFME  60
DSSGVPAECQ KPVAEPQPVG PTEEQSHGAS KRKAIAAPDT SSVNCAGLCS VTRRKKNVCK  120
GSESGKTHKS NSKEVVHVRA RRGQATDSHS LAERVRRKKI NERMRCLQDL VPGCYKTMGM  180
AGVLDEIINY VQSLQNQVEF LSMRLSAASS FYDYGMGVEA ITTNQVNPCT EHLNCLFMCN  240
VDRGGACSCS YAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673611.10.0PREDICTED: transcription factor BEE 1-like isoform X2
TrEMBLM0TWB30.0M0TWB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P00560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-49BR enhanced expression 1