PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P00580_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 234aa MW: 24640.1 Da PI: 8.2108

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P00580_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.3	3.8e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ + +l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++ GSMUA_Achr9P00580_001 4 SCNGCRVLRKGCSDGCTIRPCLqwiksPEAQANATVFLAKFYGRAGLANLIDAGPEHLRPAIFQSLLYEACGRIVNPIYGSVGLLWSG 91 6************************************************************************************* PP DUF260 84 qqqleqlkaelallk 98 ++ql+q+++e++l + GSMUA_Achr9P00580_001 92 SWQLCQAAVEAVLKG 106 *******998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.691	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKS PEAQANATVF LAKFYGRAGL ANLIDAGPEH 60 LRPAIFQSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPVT QISSDSAAAA 120 VPAFKAYDIR HVAKKSDAAA VPGGLHSVAA RSRTRRENGS AFSGETAERS HVSQGEPDAE 180 PADVGLDLRL GLEPESRNGG GVAGGEPVVV PQMERRKAWA ADACRVELGL SLVA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954764	8e-43	EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBank	KJ728404	8e-43	KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415791.1	1e-155	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	3e-79	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	M0TWB5	1e-169	M0TWB5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P00580_001	1e-170	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-81	LOB domain-containing protein 41