PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P01040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 282aa    MW: 31342 Da    PI: 7.3137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P01040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09169216455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i ++++ L+ l+P +    ++   Ka iL + ++Y++sLq
  GSMUA_Achr9P01040_001 169 SHSLAERVRRKKISERMDVLQGLVPGC----HQMKGKALILDEIINYVRSLQ 216
                            8*************************9....667789**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16163233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.96E-12163220No hitNo description
PROSITE profilePS5088814.85165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAFSCQDYHL ILDSACLSNM EMPICPQHLG EIDCYPWFEA NPKISATDAR TQVTGSSTSD  60
DCSRAPCIGR SPVLDEPQGD EIPRSPPGCA ERKRKPSTAG ARLITGKSQV HVHACGIWFP  120
WTVHSSLLLP HDLLHEIGKK KPKVDGKKAS EPPVDVIHVR ARRGEATDSH SLAERVRRKK  180
ISERMDVLQG LVPGCHQMKG KALILDEIIN YVRSLQNQVE FLSTKLALLS PVLHDLGYLS  240
GQPEVGEEPF LPLILVVFFR RLYIIHYNLI PDDTRIDQSG SG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686993.11e-165PREDICTED: transcription factor ALC-like
TrEMBLM0TWG10.0M0TWG1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P01040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-41bHLH family protein