PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P01330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CAMTA
Protein Properties Length: 1060aa    MW: 118978 Da    PI: 5.9884
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P01330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.11.6e-53121273117
                   CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                            +e +krwlk++e+  iL+n++++ lt e+++ p+sgsl+L+nrk++r+frkDGy w+kkkdg+t+ E+he+LKvg+v++l+cyYah+e
  GSMUA_Achr9P01330_001  12 QEaQKRWLKPSEVFFILQNYKQFPLTPEPPHLPPSGSLFLFNRKVLRFFRKDGYMWRKKKDGRTIGEAHERLKVGNVDALSCYYAHGE 99 
                            6669************************************************************************************ PP

                   CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                            +np fqrr++w+L+ ++ +ivlvhy+ev
  GSMUA_Achr9P01330_001 100 QNPYFQRRIFWMLDPAYGHIVLVHYREV 127
                            **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6427133IPR005559CG-1 DNA-binding domain
SMARTSM010767.5E-7210128IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4713126IPR005559CG-1 DNA-binding domain
PfamPF018331.3E-8494570IPR002909IPT domain
CDDcd001022.72E-4494579No hitNo description
Gene3DG3DSA:2.60.40.101.4E-8495584IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.1E-17495578IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.1E-12693785IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.38E-13697787IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-7713785No hitNo description
PROSITE profilePS5029714.212713785IPR020683Ankyrin repeat-containing domain
PfamPF000235.3E-4726752IPR002110Ankyrin repeat
SMARTSM002484.6E-4726755IPR002110Ankyrin repeat
PROSITE profilePS5008811.247726758IPR002110Ankyrin repeat
SMARTSM0001521846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.071847876IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.9E-7850957IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.35904926IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.986906934IPR000048IQ motif, EF-hand binding site
PfamPF006120.011907925IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0023927949IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67928956IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4931949IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1060 aa     Download sequence    Send to blast
MQHGFDINVL CQEAQKRWLK PSEVFFILQN YKQFPLTPEP PHLPPSGSLF LFNRKVLRFF  60
RKDGYMWRKK KDGRTIGEAH ERLKVGNVDA LSCYYAHGEQ NPYFQRRIFW MLDPAYGHIV  120
LVHYREVAEG RYVSGSISNF STESCSNLNQ TTSIINADKG INSGTTELNE PYYSPGSTEE  180
VSSKFVLENF EANRNNLLDR LENPDKKPQP EVNQALRNLA AQLSLDDDDD DDSIYFREVL  240
PAYSTQNEST LGLGHLHYEQ TEFSQAHENL LQGLELRGHG EINEAEKQQS YATTQLPKVL  300
GDHGAKQSEP LYLESPSWTD VLTSSSSSAG VNRHGRNSNF LALNGILDSS IPKDTLRPFL  360
DREKISANSF VPSENLDCYK AVDQSNGHEI LESDLHLQLS ATRRFLLGSE NSIESPSSVS  420
HLKASDIHHT SGEITYEASS RKENSTDWMG TIPVTPGNTT YTSEFSSMLF DNNHFGASLG  480
TDSSLTVAQK QRFSIREISP EWAFSYESTK VIITGDFLCN PLESPWAVMF GDIEVPSEIV  540
QEGVLRCQTP QHSSGKVTLC VTSGNRESCS EVREFEFRTK PTTSSSGDIC TTDAAKNSEE  600
LLLLARLVQM MLCGYDGSTI AKGAIETQLE NSRKVNTTDE RWQQIIEALQ MGCDISLDTR  660
DWIMQELLKD KLQNWLSLRR QSNEQTGCLL SKQEQGIIHL ISGLGYEWGL GPILDFGVGI  720
NFRDSNGWTA LHWAAHYGRE KMVAALLAAG ASAGLVTDPT TQDPLGKTPG FLASATGQKG  780
LAGYLSEVAL TSHLSSLVIE ESEISKGSAE VEAERAVESI SQRSVEIRGG TEDELSLKDS  840
LAAVRNAAQA AARIQAAFRA HSFRKRQLKS AWSCDDYGMT PGDIQELSAA SKGHRLYHGS  900
HDHNFDKAAL SIQKKYRGWK GRKDFLTLRQ HVVKIQAHVR GHQVRKKYRE FVWTVSVIEK  960
VILRWRRKGV GLRGFRAEPE MVRDEEEEDI TKIFRKQKVD AAVDEAVSRV LSMVESPDAR  1020
QQYRRMLGRY HEAKAEFSNS DEATSRLRDD LEAIDNDFIY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415886.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLM0TWJ00.0M0TWJ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P01330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-163Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]