PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P01380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 373aa    MW: 40792.2 Da    PI: 8.1548
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P01380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.12e-4191167278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            C v+gC++dls+ +eyhrrhkvCe+hsk+p v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  GSMUA_Achr9P01380_001  91 CSVDGCTSDLSNSREYHRRHKVCEAHSKTPIVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKSQP 167
                            **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-3484152IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.75288165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-3989169IPR004333Transcription factor, SBP-box
PfamPF031103.9E-3191164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEWNPKLPSR DFAEVEQNAE LHMASLVASC GGLGSRSSGR DCSVDLKLGG SGDFRSPASL  60
GSQPTMSMAV ASSGPSKRAR APGNAGQIAS CSVDGCTSDL SNSREYHRRH KVCEAHSKTP  120
IVMVGGQEQR FCQQCSRFHL LVEFDEVKRS CRKRLDGHNR RRRKSQPESI NPARLFPNHQ  180
GLNSRKCLVY PHVLPAPIQE LNWAGIIQPE DMLYRNHLPL HVGDEQPFSG SFCSYRKGRQ  240
LPFIQDDATA FGITTMAQST CLQPLLKNTP PSAESSSKIL CDRIQQVHSD CALSLLSSST  300
QNPGIALSQM LPAGRIPMHQ SLLSSLPYGN LGLHSMGMVF ACGADTDLHC QSVFHVPEGS  360
SEGVSQTFPF CWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2881164284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415922.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLM0TWJ50.0M0TWJ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P01380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-44SBP family protein