PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P02600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 193aa    MW: 22691.4 Da    PI: 7.0972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P02600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.1e-3242129184
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k ltpsdv+k++rlv+pk++ae++      +g+  ++  l++edesg++W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F
  GSMUA_Achr9P02600_001  42 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggdSGD--KGLLLSFEDESGKTWQFRYSYWTSSQSYVLTKGWSRFVKEKRLDAGDVVLF 127
                            99***************************955444..6779*********************************************** PP

                            EE CS
                     B3  83 kl 84 
                            ++
  GSMUA_Achr9P02600_001 128 ER 129
                            94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4133142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-3139134IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-3040139No hitNo description
PROSITE profilePS5086314.62142144IPR003340B3 DNA binding domain
PfamPF023621.0E-2842129IPR003340B3 DNA binding domain
SMARTSM010194.0E-2542142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAQHHPQPWY SWEPHMSLHH HHYQHLYRAE QEEARYEREH MFEKPLTPSD VGKLNRLVIP  60
KQHAEKYFPL GGDSGDKGLL LSFEDESGKT WQFRYSYWTS SQSYVLTKGW SRFVKEKRLD  120
AGDVVLFERP RLGGDLKMTR DSKLSQPAGD QRNEAIQSET EAPTTSKRLR LFGVDLDYQP  180
EPRPDPMTSI SWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48371443106B3 domain-containing transcription factor NGA1
5os9_B2e-48371443106B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416038.11e-113PREDICTED: B3 domain-containing protein Os11g0156000-like
TrEMBLM0TWW71e-141M0TWW7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P02600_0011e-142(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.16e-43B3 family protein