PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P03210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 140aa    MW: 15232.5 Da    PI: 9.4731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P03210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000733153123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C++ Fs+   L  H  +H
  GSMUA_Achr9P03210_001 31 FECKTCNRQFSSFQALGGHRASH 53
                           89**********99999998887 PP
2zf-C2H213.90.000167698123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++Cg+ F     L  H+r+H
  GSMUA_Achr9P03210_001 76 HQCSICGQEFALGQALGGHMRRH 98
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.37E-92998No hitNo description
PROSITE profilePS5015710.3253158IPR007087Zinc finger, C2H2
PfamPF139128.2E-123155IPR007087Zinc finger, C2H2
SMARTSM003550.23153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-47498IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.7E-97599IPR007087Zinc finger, C2H2
SMARTSM003550.0617698IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.86876103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MKRYIIGGEI DGVRMAHVLM LLSRGGGGRM FECKTCNRQF SSFQALGGHR ASHKKSRLAA  60
GDHGRAEAVA DKPKVHQCSI CGQEFALGQA LGGHMRRHRT TTEGFVHSLA EKKTGDDRGG  120
MFLDLNLPPL ENELKLGDCG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6205201e-135JX620520.1 Gossypium hirsutum clone NBRI_GE66777 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416690.14e-92PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD44e-29ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM0TX301e-97M0TX30_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P03210_0012e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-26C2H2 family protein