PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P03270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 222aa    MW: 24833.8 Da    PI: 10.2532
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P03270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.6e-383389662
                 zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                           l+cprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  GSMUA_Achr9P03270_001 33 LRCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNK 89
                           78****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-241782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6743387IPR003851Zinc finger, Dof-type
PfamPF027012.7E-323387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWNQQRS IQRPAAAGGG GELRCPRCDS TNTKFCYFNN YSLSQPRHFC  60
KTCRRYWTRG GALRNVPVGG GCRRNKRNKS TGSSSKSAAT TFTADRQPGP SSSSPDVVTA  120
HPLTATSSSS SFFNTFYLSK ISQSFNLISF PTSSYSRFYL DRERGHVHWE IKLPSNNSCF  180
GCILYISRGM HELPQTQSVM RSEGQGDKHF IWAYAVRFGH GL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416134.11e-73PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLM0TX361e-164M0TX36_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P03270_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-31DNA binding with one finger 2.4