PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P04090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 189aa    MW: 21477.3 Da    PI: 8.2186
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P04090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.8e-21666257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr9P04090_001  6 STRWCPTPEQLMILEEMYRSgVRTPNASQIQQITARLsyygRIEGKNVFYWFQNHKARERQ 66
                           58*****************99**************************************97 PP
2Wus_type_Homeobox122.81.4e-39667364
      Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           +tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaRerqk
  GSMUA_Achr9P04090_001  6 STRWCPTPEQLMILEEMYRSGVRTPNASQIQQITARLSYYGRIEGKNVFYWFQNHKARERQK 67
                           79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.317267IPR001356Homeobox domain
SMARTSM003899.7E-6471IPR001356Homeobox domain
CDDcd000861.19E-5567No hitNo description
PfamPF000469.4E-19666IPR001356Homeobox domain
SuperFamilySSF466894.71E-12767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-8866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPQVPSTRWC PTPEQLMILE EMYRSGVRTP NASQIQQITA RLSYYGRIEG KNVFYWFQNH  60
KARERQKLRR RLCSHYQLLY SANSLPHHQF YCSQEAPVFP LPFHHATPSP FLHQDANSVC  120
KMEAGDAEEA SSTSDATLRH ESMAMVDAAW AVPSCCRPLR TLDLFPTKST GLKDECSTTS  180
KSSCSSTTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8624973e-39JQ862497.1 Heliconia orthotricha microsatellite HoB5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416700.11e-142PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLM0TXB81e-140M0TXB8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P04090_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-41WOX family protein