PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P04270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 471aa    MW: 52769.9 Da    PI: 8.07
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P04270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23e-16118167155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+tae Aa  +++a+ +++g
  GSMUA_Achr9P04270_001 118 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAEAAATTYDRAAIRFRG 167
                            78*******************......55***********************9997 PP
2AP248.62.1e-15210260155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+I   p   g +k+++lg f+++ eAa+a+++a+ k++g
  GSMUA_Achr9P04270_001 210 SKYRGVTLHK-CGRWEARIGQfP---G-KKYVYLGLFDSEIEAARAYDKAAIKYNG 260
                            89********.7*********88...3.6**********99************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-8118167IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-15118176IPR016177DNA-binding domain
CDDcd000181.66E-22119177No hitNo description
Gene3DG3DSA:3.30.730.102.7E-16119176IPR001471AP2/ERF domain
PROSITE profilePS5103217.385119175IPR001471AP2/ERF domain
SMARTSM003804.1E-30119181IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-17210269IPR016177DNA-binding domain
PfamPF008474.1E-10210260IPR001471AP2/ERF domain
CDDcd000182.69E-25210270No hitNo description
PROSITE profilePS5103216.16211268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-16211268IPR001471AP2/ERF domain
SMARTSM003801.3E-30211274IPR001471AP2/ERF domain
PRINTSPR003679.7E-7212223IPR001471AP2/ERF domain
PRINTSPR003679.7E-7250270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSRRGAMLGL DLASSFDSTS LEAKSGREQM DDSVTTDSSV LDAEDSRSTR PAAAYEFSIL  60
KGYVSGEGEN GDGIGAPQQP GLVTKQLFPL APLPLWMDLT PHQPPTKKSR RGPRSRSSQY  120
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AEAAATTYDR AAIRFRGVDA DINFNLSDYE  180
EDLKQIKYLP KVEFVHFLRR QSTRFSRGGS KYRGVTLHKC GRWEARIGQF PGKKYVYLGL  240
FDSEIEAARA YDKAAIKYNG SNAVINFDPS TYEEVISEYV TKADDVDLNL RISQPVVHGP  300
KGNGIHCGAN LKPMMPTEQC TNVFLVDRYI VSDISESVPV CFCLIDSRMQ ESQSSPLQHH  360
QDSQLPKPQL VFLPCKRHLQ QPIISVPLHE LLHHVTVSGT QIIRAQMELQ CGACGHVSYL  420
LCISPTLARI GGTISSIICL QEERRDVYSL FQPKLNVTRH MNHVYVSVAH F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes (PubMed:20713616). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Repressed by SRT1 via epigenetic histone H3K9 acetylation (H3K9ac) regulation (PubMed:27181944). {ECO:0000269|PubMed:27181944, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416270.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotQ2TQ344e-93AP21_ORYSJ; APETALA2-like protein 1
TrEMBLM0TXD60.0M0TXD6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P04270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-87related to AP2.7
Publications ? help Back to Top
  1. Fu FF,Xue HW
    Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.
    Plant Physiol., 2010. 154(2): p. 927-38
    [PMID:20713616]
  2. Sekhar S, et al.
    Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.
    J. Plant Physiol., 2015. 179: p. 21-34
    [PMID:25817414]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Zhang H,Lu Y,Zhao Y,Zhou DX
    OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression.
    Plant Sci., 2016. 248: p. 28-36
    [PMID:27181944]
  5. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]