PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P04330_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 178aa MW: 19276.9 Da PI: 7.773

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P04330_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.7e-42	15	113	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCkvlrr+C+++C+lapyfp ++ ++f n+h++FGa n++kll+++p+ +r+da+ss++yeA+ar+rdPvyG++gv+++lq+q++ GSMUA_Achr9P04330_001 15 PCAACKVLRRRCTDKCMLAPYFPPTDLRTFTNAHRVFGAGNITKLLQEIPQWQRQDAASSMAYEANARMRDPVYGCTGVVFQLQNQVS 102 7************************************************************************************* PP DUF260 89 qlkaelallke 99 +l+a+la++++ GSMUA_Achr9P04330_001 103 ELQAQLARAQA 113 *****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-42	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGSASPPPAA GVVGPCAACK VLRRRCTDKC MLAPYFPPTD LRTFTNAHRV FGAGNITKLL 60 QEIPQWQRQD AASSMAYEAN ARMRDPVYGC TGVVFQLQNQ VSELQAQLAR AQAAVANLHA 120 ENANLTALIC ERMSQALQET TAVTVDGIAP TPYVFQNDSF FLDGSSVPGY TREPPLRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	7	112	3	108	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	7	112	3	108	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416706.1	1e-130	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-54	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	M0TXE2	1e-129	M0TXE2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P04330_001	1e-130	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-41	LOB domain-containing protein 11