PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P04830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 182aa    MW: 19635.7 Da    PI: 7.2159
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P04830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.61.4e-24666259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                           +Dgy+WrKYGqK++ +s fprsYY C ++   +C +kk v+rs++dp ++++tY g+H+++
  GSMUA_Achr9P04830_001  6 NDGYKWRKYGQKKILNSSFPRSYYHCNHKsyyRCDAKKMVQRSDDDPYTFQVTYCGSHTCH 66
                           7*************************9998889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.62E-23467IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-24466IPR003657WRKY domain
SMARTSM007742.0E-29567IPR003657WRKY domain
PROSITE profilePS5081120.323668IPR003657WRKY domain
PfamPF031063.1E-23666IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEIPPNDGYK WRKYGQKKIL NSSFPRSYYH CNHKSYYRCD AKKMVQRSDD DPYTFQVTYC  60
GSHTCHTSPT PKLIPTLVPS GSVNDNDDGG NGNPQGAPLG LEAMHPVASQ STPIHLQNWL  120
EGNPSSTGAL LVAHSGVSSR SSRQVAQVQG GRDIDCSVAD ALLNTASSGS SMDVIVSPTH  180
GE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18665968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018687003.11e-133PREDICTED: WRKY transcription factor 55-like
TrEMBLM0TXJ21e-133M0TXJ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P04830_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-30WRKY DNA-binding protein 55