PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P05010_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 363aa MW: 40222.3 Da PI: 7.6511

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P05010_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.2	3.7e-15	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ GSMUA_Achr9P05010_001 84 RTRWMPKPEQILILESIFNSgMVNPPKEETVRIRKLLqkfgAVGDANVFYWFQNRRSRSRR 144 89***************99************99999**************997 PP
2	Wus_type_Homeobox	105.4	3.6e-34	83	146	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtRW P+peQi iLe++++sG+++P+kee+ ri++ L+++G+++d+NVfyWFQNr++R+r++q GSMUA_Achr9P05010_001 83 VRTRWMPKPEQILILESIFNSGMVNPPKEETVRIRKLLQKFGAVGDANVFYWFQNRRSRSRRRQ 146 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-14	80	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.191	80	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-8	81	149	IPR009057	Homeodomain-like
SMART	SM00389	4.4E-6	82	149	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-13	84	144	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MKNTLVQSIS STDCPRPIYN SPHVCTCKPL PFPHGNPSID FVLLPRHSNY PPATSSMGDH 60 GRDRNSSSTL HRSTADSTET EPVRTRWMPK PEQILILESI FNSGMVNPPK EETVRIRKLL 120 QKFGAVGDAN VFYWFQNRRS RSRRRQRQLQ ASLMADPRAA RGVTQQAGGG VLPHEPPTSS 180 SSSSTSSNNS SFPCSSSASS SPSSYNFVMD DGSDDLFSMI SSQTPFMCSS HVPRSHHMFA 240 WLHETLNSFP SFRAFCSMTF YLIGSLDPWH HKSVWDINAL TLNQVTLHLV LIIECMDSGT 300 ITVFIDGVPS EVPRGPIDTR AMFGQNVMLV HSSGELLPVN EHGVVVQSLQ MGESYFLVSN 360 STT

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MKNTLVQSIS STDCPRPIYN SPHVCTCKPL PFPHGNPSID FVLLPRHSNY PPATSSMGDH  60
GRDRNSSSTL HRSTADSTET EPVRTRWMPK PEQILILESI FNSGMVNPPK EETVRIRKLL  120
QKFGAVGDAN VFYWFQNRRS RSRRRQRQLQ ASLMADPRAA RGVTQQAGGG VLPHEPPTSS  180
SSSSTSSNNS SFPCSSSASS SPSSYNFVMD DGSDDLFSMI SSQTPFMCSS HVPRSHHMFA  240
WLHETLNSFP SFRAFCSMTF YLIGSLDPWH HKSVWDINAL TLNQVTLHLV LIIECMDSGT  300
ITVFIDGVPS EVPRGPIDTR AMFGQNVMLV HSSGELLPVN EHGVVVQSLQ MGESYFLVSN  360
STT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416341.2	1e-141	PREDICTED: WUSCHEL-related homeobox 11-like
TrEMBL	M0TXL0	0.0	M0TXL0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P05010_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	5e-34	WUSCHEL related homeobox 11