PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P05020_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 328aa MW: 35989.5 Da PI: 7.836

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P05020_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.5e-40	50	110	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k s GSMUA_Achr9P05020_001 50 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKDSD 110 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	47	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	52	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MSEVKDPAIK LFGATIPLPW EIRNSIEYFE VNYTKTEADC SVPEKVLKKP DKILPCPRCN 60 SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKSKDSD SGSMIHGEKR 120 EEPSCASSAT ASNFVENGSA KTVVHVEQSG MQVYCNGLAP LPHLQCYPGA PWAYPWRPAW 180 NNVAVMEAGK SHPFPFMPAP FWGFTTWPNG AWNLPCVGSS GCISPSSSTS NSNCSGNGSP 240 TLGKHSRDAS LQSEEKMEKS LWVPKTLRID DPEEAAKSSI WATLGIKPDI GGIFQSKAES 300 KVDESDAAQV LHANPAAVSR SHSFQEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416342.1	1e-167	PREDICTED: cyclic dof factor 3-like
TrEMBL	M0TXL1	0.0	M0TXL1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P05020_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	1e-78	cycling DOF factor 1