PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P05660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 96aa    MW: 10247.7 Da    PI: 4.5381
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P05660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind241e-071448236
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHH CS
           HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeeef 36
                           Fl+k+ye+++d ++++++sws  +  fvv+++ e+
  GSMUA_Achr9P05660_001 14 FLTKTYEMVDDLSTNSIVSWSPINAGFVVWKQLEL 48
                           9********************999******99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-9748IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-6949IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.1E-51449IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEGSRGSSNS PSPFLTKTYE MVDDLSTNSI VSWSPINAGF VVWKQLELLG ICSPSISSTI  60
ISPASSGCSI LKVSERLTLI GGSLQMTISN EDKSIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683306.11e-17PREDICTED: heat stress transcription factor A-4b-like
TrEMBLM0TXS55e-61M0TXS5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P05660_0018e-62(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.18e-14heat shock transcription factor A1D