PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P05670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BES1

Protein Properties

Length: 304aa MW: 32507.2 Da PI: 7.2199

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P05670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	192.3	1.8e-59	10	127	1	118
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasa 88 ++++r+ptw+ErEnnkrRERrRRaiaakiyaGLR++Gnyklpk++Dnn VlkALc+eAGw ve+DGttyrkg+kp e+ +++gssas GSMUA_Achr9P05670_001 10 TSGTRMPTWRERENNKRRERRRRAIAAKIYAGLRMYGNYKLPKHCDNNAVLKALCEEAGWAVEEDGTTYRKGCKPVEHVDIVGSSASP 97 5899********************************************************************************** PP DUF822 89 spesslqsslkssalaspvesysaspksss 118 sp+ s++ s+ ss+lasp++s + +++ GSMUA_Achr9P05670_001 98 SPCVSYNPSPASSTLASPMSSTLITNAKNL 127 *****99999999999887655444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.2E-57	11	144	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MKEGRVEEMT SGTRMPTWRE RENNKRRERR RRAIAAKIYA GLRMYGNYKL PKHCDNNAVL 60 KALCEEAGWA VEEDGTTYRK GCKPVEHVDI VGSSASPSPC VSYNPSPASS TLASPMSSTL 120 ITNAKNLTSG TEGNSLVPWL KSLSSASSTS TSSKLPDLHH LYVHGGSISA PVTPPLSSPT 180 ARSSRIKTDW DAPAIHPTWA GSNLTFLPSS MPPSPGHQDT PQSAWLASLR LPSGGPSSPT 240 FSLISSNPLM SDGGSDEFEF GSSSNGTDTA TGLVKPWEGE MIHEECASDE LDLTLGSSKT 300 RSVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	5e-24	14	85	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	5e-24	14	85	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	5e-24	14	85	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	5e-24	14	85	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP721490	8e-90	KP721490.1 Eucalyptus grandis brassinazole-resistant 1 protein (BES3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416433.1	0.0	PREDICTED: protein BZR1 homolog 3
Swissprot	Q5Z9E5	1e-109	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	M0TXS6	0.0	M0TXS6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P05670_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-78	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]