PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P05930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 183aa    MW: 20232.1 Da    PI: 10.4702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P05930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-15101145347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE++l++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qky
  GSMUA_Achr9P05930_001 101 AWTEEEHKLFLAGLERLGRGDWRGISRNFVTTRTPTQVASHAQKY 145
                            7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.98194150IPR017930Myb domain
SuperFamilySSF466895.81E-1895150IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-1897149IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-1198144IPR009057Homeodomain-like
SMARTSM007178.2E-1198148IPR001005SANT/Myb domain
CDDcd001671.15E-9101146No hitNo description
PfamPF002493.7E-12101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERKCCEGVE SEHNSRNSIS PRRMVGGGLR LFGMQLEMAA SPMKKCFSTD CLTCPAAASS  60
SPSPSSSSSL VSIDETAEKT SNGYLSDGLV VRTQERKKGV AWTEEEHKLF LAGLERLGRG  120
DWRGISRNFV TTRTPTQVAS HAQKYFLRQS GLNKKKRRSS LFDVVNRSPS AAFTIIRLLL  180
IQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416462.11e-108PREDICTED: uncharacterized protein LOC103997055
TrEMBLM0TXV21e-132M0TXV2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P05930_0011e-133(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-44MYB_related family protein