PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P06330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CPP
Protein Properties Length: 506aa    MW: 55378.6 Da    PI: 7.8789
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P06330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-134584242
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                           +kk+CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ e+
  GSMUA_Achr9P06330_001 45 RKKNCNCKHSKCLKLYCECFASGVYCDG-CNCSNCCNNVEN 84
                           689*************************.********9875 PP
2TCR51.22.5e-16129168140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  GSMUA_Achr9P06330_001 129 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFE 168
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-124484IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.26645169IPR005172CRC domain
PfamPF036381.2E-94681IPR005172CRC domain
SMARTSM011145.0E-20129170IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.9E-13132167IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSTFVIFTNC KGLAHNFTMI HFSKTESPKS RPRLLYDAKD GTPTRKKNCN CKHSKCLKLY  60
CECFASGVYC DGCNCSNCCN NVENEAARHE AVEATLERNP NAFRPKIGSS PHASRDGRDE  120
AGELPLVGKH NKGCHCKKSG CLKKYCECFQ ANILCSDNCK CMDCKNFEGS EERKALFRGD  180
HGSALYMQQA ANASLNGAIG PSAFMSPSAS RKRKNQELFF GASIKDQPTK RLTQLPQART  240
SSPASCSAST PAASAINTAP MASTKVTYRS LLADVVQPEH IRDLCKLLVM VSGEVAKTFA  300
DRKVQEKLAE KESQVESSLV PSEQEIDQRQ KDADMQKASV DEHSSGIPAE KTSMEESESD  360
CGDEQKGGRP MSPGTLALLC DEQDTVFMTS QATGTTPRSS NNHNTSEVYA EQERCVLTEF  420
RDYLLKLVTY GRMKEEKYSS MSSKCEVSPC HMVSAPNGVA RGAVPAAAEK SQTVKLVPPN  480
SNKYPSVEQQ TIGNGDIKPK IEKPEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-314617711131Protein lin-54 homolog
5fd3_B6e-314617711131Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416502.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-154TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM0TXZ20.0M0TXZ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P06330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-139Tesmin/TSO1-like CXC domain-containing protein