PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P07180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 560aa    MW: 60394.6 Da    PI: 8.5049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P07180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-09164190127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++ C ++ rtG C++G +CkF+H+p
  GSMUA_Achr9P07180_001 164 PGEPDCAYYIRTGLCRFGRTCKFNHPP 190
                            5789*********************96 PP
2zf-CCCH34.43.6e-11213237327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C+++++tGtCk+G+ CkF+H++
  GSMUA_Achr9P07180_001 213 QPECQYYLKTGTCKFGAICKFHHPK 237
                            799********************96 PP
3zf-CCCH32.11.9e-10260283427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            + C ++ rtG+Ck+G++CkF+H++
  GSMUA_Achr9P07180_001 260 KDCAYYIRTGECKFGGTCKFHHPQ 283
                            68********************97 PP
4zf-CCCH38.51.9e-12419445127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+f+++tG Ck+G+ CkF+H++
  GSMUA_Achr9P07180_001 419 PGQPECQFYMKTGDCKFGAVCKFHHPK 445
                            5789*********************96 PP
5zf-CCCH35.61.5e-11465491127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++ C f++r+G+Ck+G++CkF H++
  GSMUA_Achr9P07180_001 465 PGEPVCVFYSRYGICKFGPNCKFDHPM 491
                            57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.4E-4163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695163191IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-6165190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5168192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314210238IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-5210237IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8213237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5214239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4216237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6255284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723256284IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-4258283IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7260283IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6418445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483418446IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9420445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5422448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5424446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746464492IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-8464491IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8466491IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5468492IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSTCDGKFCE GSVSVTVTVS FAGPLTRSLD RAGVKRERKG EIEWLAVIPL LVCGEESVSP  60
PPPPLRPLDL AATLPGLCAT LLRLVPGLFG DRRCRSLRWI SGGNGRSCGD DLVMAGDGWS  120
TRAPARTVTE GPSLSSQPGT DEEAMWKRMR ESDSMETGPY PERPGEPDCA YYIRTGLCRF  180
GRTCKFNHPP NRMLAVAAAA ARIRGGYPER VGQPECQYYL KTGTCKFGAI CKFHHPKEKA  240
GIAGRVQLNI LGYPLRLNEK DCAYYIRTGE CKFGGTCKFH HPQPSNAVVA LRGSPVYPAV  300
HSPTTPGQQT YPAEMTNWTL SRSSFIPSPR WQASSSYAQL ILPQGVVQVP GWTSYSVSLG  360
QLGSSPESQR TTGTAQFYGP SQQGETSIGA QGKFPSYRPG STPMGLYAVP GENIFPERPG  420
QPECQFYMKT GDCKFGAVCK FHHPKERLVP VPNCVLSPLG LPLRPGEPVC VFYSRYGICK  480
FGPNCKFDHP MGTFAYGVSA SSATGVPTAW HLLGSSLEPP TLAPPPSQGT ANGSSGASRR  540
ISISESRHTA AGDENEEAES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416573.20.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM0TY770.0M0TY77_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P07180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1