PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P08090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 241aa    MW: 26671.3 Da    PI: 7.7781
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P08090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.33.7e-3368123359
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                             vrY+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e+e 
  GSMUA_Achr9P08090_001  68 VVRYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKETEG 123
                            589*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2369124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.4E-3069121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-3070120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13771120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.04E-19168234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30170235IPR009057Homeodomain-like
TIGRFAMsTIGR015657.5E-28173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDLSGQEGEI PIPITSVYVG GHGHGSIHDS PPIHHPSNGP PPPPLSTATT EDHHHNTTNS  60
YSTKKGVVVR YRECLKNHAA SIGGNATDGC GEFMPSGEEG TLEALKCSAC SCHRNFHRKE  120
TEGEPCCDCP ACNSLIPRAT PHNMIMPLGV MQTSESDEME GVGAMMARPV VVKKRFRTKF  180
TPEQKEKMLS FAEKVGWRLQ KQEESVVQQF CQEIGVKRRV LKVWMHNNKH HLAKKNSLQL  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-241722301674ZF-HD homeobox family protein
1wh7_A1e-241742301874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416998.11e-169PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_009416999.11e-169PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018686824.11e-169PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018686825.11e-169PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S03e-80ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLM0TYG81e-180M0TYG8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P08090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-78homeobox protein 31