PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P08300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Whirly

Protein Properties

Length: 167aa MW: 18803.7 Da PI: 10.1037

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P08300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	165.6	1.3e-51	1	129	11	139
Whirly 11 vkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 +k+++p + +lds + ++ ++G+++l++ +a+++rkydWekkq+falsatev++l+ l++ esceffhdp++k+s eG+v+k+l++ P GSMUA_Achr9P08300_001 1 MKPILPAIRELDSRSSRVYKNGSVILTFWPAVGQRKYDWEKKQVFALSATEVGSLIGLGPTESCEFFHDPSMKSSLEGQVKKSLSISP 88 799*********************************************************************************** PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 l + G+f+nlsv n+++k+ne++svP++kaef+v+r++l+ GSMUA_Achr9P08300_001 89 LGNDNGYFLNLSVVNNIQKTNERLSVPITKAEFTVIRTVLS 129 ************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08536	3.3E-51	1	127	IPR013742	Plant transcription factor
Gene3D	G3DSA:2.30.31.10	4.1E-58	1	147	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	5.57E-57	1	165	IPR009044	ssDNA-binding transcriptional regulator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MKPILPAIRE LDSRSSRVYK NGSVILTFWP AVGQRKYDWE KKQVFALSAT EVGSLIGLGP 60 TESCEFFHDP SMKSSLEGQV KKSLSISPLG NDNGYFLNLS VVNNIQKTNE RLSVPITKAE 120 FTVIRTVLSY VLPHIMGWPQ AMMRAQQPTT ETKTSKSRPD PIFEWGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	4e-60	2	144	27	169	StWhy2
3n1i_A	4e-60	2	144	27	169	protein StWhy2
3n1j_A	4e-60	2	144	27	169	Protein StWhy2
3n1k_A	4e-60	2	144	27	169	protein StWhy2
3n1l_A	4e-60	2	144	27	169	protein StWhy2
3r9y_A	4e-60	2	144	27	169	Why2 protein
3r9z_A	4e-60	2	144	27	169	Why2 protein
3ra0_A	4e-60	2	144	27	169	Why2 protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ957798	0.0	KJ957798.1 Musa AB Group whirly transcription factor domain-containing protein (WHY2) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018673968.1	1e-122	PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like, partial
Swissprot	D9J034	4e-59	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	M0TYI9	1e-120	M0TYI9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P08300_001	1e-121	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3012	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	1e-60	WHIRLY 2