PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P08480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 256aa    MW: 28900.3 Da    PI: 10.3833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P08480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171863147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ede+l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr9P08480_001 18 RGHWRPGEDEKLRQLVEQFGPQNWNSIAEKLR-GRSGKSCRLRWFNQ 63
                           899*****************************.***********996 PP
2Myb_DNA-binding59.19.7e-1971113246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr9P08480_001  71 RPFTEEEEERLLAAHRIHGNK-WALIARVFP-GRTDNAVKNHWHV 113
                            69*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9611364IPR017930Myb domain
SuperFamilySSF466891.72E-2916111IPR009057Homeodomain-like
SMARTSM007179.5E-141766IPR001005SANT/Myb domain
PfamPF002491.9E-161863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-271971IPR009057Homeodomain-like
CDDcd001671.70E-132162No hitNo description
PROSITE profilePS5129427.66365119IPR017930Myb domain
SMARTSM007172.0E-1669117IPR001005SANT/Myb domain
PfamPF002491.2E-1570112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2172117IPR009057Homeodomain-like
CDDcd001674.16E-881112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGSASATAGS DDTKPCPRGH WRPGEDEKLR QLVEQFGPQN WNSIAEKLRG RSGKSCRLRW  60
FNQLDPRINK RPFTEEEEER LLAAHRIHGN KWALIARVFP GRTDNAVKNH WHVIMARRQR  120
ERSRLFNKRA PRDLLLDYTD GSPNRVFQFG SAAEETSSVR SWVFSGSATQ SPPRTLGGEK  180
DAASVLGSCK FHGRSFHPYH AKYEWVPPRV SMKVFSPGDD DSAMSTNPNE EHGGDDRSSK  240
RKGVPFIDFL GVGITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31181187107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260310.0AC226031.1 Musa acuminata clone BAC MA4-11M6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416939.10.0PREDICTED: myb-related protein B-like
SwissprotQ6R0C42e-66MYB52_ARATH; Transcription factor MYB52
TrEMBLM0TYK70.0M0TYK7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P08480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-65myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]