PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P08900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 248aa MW: 26581.2 Da PI: 8.4353

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P08900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5e-15	165	225	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 + l+r++r++kNRe+A rsR+RK+a++ eLe v Le eN +L e ee k+ k +e GSMUA_Achr9P08900_001 165 ATLQRQKRMIKNRESAARSRERKQAYTVELESLVRRLEVENASLLREQEEHYKMRLKQLME 225 579*****************************************99999888887766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.2E-13	160	225	No hit	No description
SMART	SM00338	3.7E-10	164	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.1E-14	165	225	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.312	166	214	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.55E-19	168	218	No hit	No description
SuperFamily	SSF57959	1.53E-10	168	217	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MASSRVMPSS SSAANSDLAR QPPSMYPLAA AADPPPSSAS GDDPAGNLGS TAMDDLLRSF 60 YCEAEAPPPL PAREAAAGGK MAEQVLKEVA AAGRSVAGVD GSAAAGYGEM TLEDFLARAG 120 AQEQLLMVEN PILGFGNGVE GGGSGGVGGG GRGWKRPMVD SVDKATLQRQ KRMIKNRESA 180 ARSRERKQAY TVELESLVRR LEVENASLLR EQEEHYKMRL KQLMENLIPV TEMKKPPRIL 240 RRTHSMQW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416888.1	1e-135	PREDICTED: G-box-binding factor 4-like
Swissprot	Q0JHF1	2e-45	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	M0TYP9	1e-178	M0TYP9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P08900_001	1e-179	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	5e-25	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]