PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P08980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 162aa MW: 18315.7 Da PI: 9.0804

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P08980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.8	1.4e-11	71	113	57	99
TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++yvltkGW++Fvk++gL++gD v F + + +l+++ +r+ GSMUA_Achr9P08980_001 71 QSYVLTKGWSRFVKEKGLDAGDLVSFGRLRGGVDRLCISCRRR 113 78*************************8776777788888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-9	39	70	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-17	43	117	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.17E-15	44	112	No hit	No description
SMART	SM01019	9.2E-4	46	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-11	71	119	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.6E-8	71	113	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MSMNPITQHH PQFCSWAPPL GNPHLYRHHT YRVSQEGDQY EREHMFEKSL TPSDVGKLNR 60 LVIPKHYAEN QSYVLTKGWS RFVKEKGLDA GDLVSFGRLR GGVDRLCISC RRRGENERPP 120 AACTATTGDA AVPWSPTCYT ARAHAPTSHT GRICCIRSYN SM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416876.1	1e-100	PREDICTED: B3 domain-containing protein Os11g0156000-like
Refseq	XP_018673570.1	1e-100	PREDICTED: B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	7e-26	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M0TYQ7	1e-120	M0TYQ7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P08980_001	1e-120	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.2	1e-24	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]