PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P09260_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 175aa MW: 18046 Da PI: 8.4701

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P09260_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	78.8	7.6e-25	21	64	2	45
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisf 45 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf GSMUA_Achr9P09260_001 21 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 64 89*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.6E-22	17	64	IPR009072	Histone-fold
SuperFamily	SSF47113	8.16E-19	23	102	IPR009072	Histone-fold
Pfam	PF00808	2.4E-14	26	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MADSDNESGG HSNSKGGAAA REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE 60 FISFNYVEPL KVYLQRFREM EGEKAGGGAA ASSQSQPKDG SNAGGGPSTS VGGGGMYGGG 120 MMMMGQQMYG TGPPSALQPF QHHQMTMGGI NSLSGGGGAD GGSPSSGSRQ RHDRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-23	19	79	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416841.1	4e-78	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	8e-42	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	M0TYT5	1e-123	M0TYT5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P09260_001	1e-124	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18750	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-42	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]