PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P09600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 276aa    MW: 31003.8 Da    PI: 7.0924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P09600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-081942341055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN ++ +L+ l+P+      +K++ +++Le+ v+Y+k Lq
  GSMUA_Achr9P09600_001 194 RQRRERINARLRTLQNLVPNG-----TKVDISTMLEEGVRYVKFLQ 234
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.094184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-12188249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-11190243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-10193238No hitNo description
PfamPF000105.4E-6194234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAQESTWSSF DATMLAEEES RMIAQLLSNY QCFGEQDRDV GCCELPPSSY CSSHAADSCC  60
CWSANENSNP SLCYWSQSGD ESDGAHAIGT VPVFTNHCLV GDQVAVNQTL SLHEPTAAHA  120
EMPKRKRESH ASEDDFRRQS CKKKLQAPTN ALKSVKKARP GRNQKSIVSF QADLNTKTRS  180
NRWPATDPQS LYARQRRERI NARLRTLQNL VPNGTKVDIS TMLEEGVRYV KFLQLQIKLL  240
SSDELWMYAP VVHSGMIDGR VNSEIFVSAN TCNEWF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867480.0AC186748.1 Musa acuminata clone MA4_8L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018687015.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLM0TYW90.0M0TYW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P09600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-43ROOT HAIR DEFECTIVE 6-LIKE 2