PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P09800_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 241aa MW: 26914.4 Da PI: 9.0461

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P09800_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	100	154	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++ +++ ++++ LA++l+L rqV vWFqNrRa+ k GSMUA_Achr9P09800_001 100 RKKLRLTKEQSALLEDKFKEHATLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 154 788899***********************************************98 PP
2	HD-ZIP_I/II	118.4	3.9e-38	100	188	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLE++F+e+ +L+p++K++lar+L+l+prqv+vWFqnrRARtk+k++E+++e+L++++++l+een+rL +e +eL+ GSMUA_Achr9P09800_001 100 RKKLRLTKEQSALLEDKFKEHATLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKKTEVECEFLRKCCETLREENRRLLQEIQELK 187 69*************************************************************************************9 PP HD-ZIP_I/II 89 e 89 + GSMUA_Achr9P09800_001 188 S 188 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-18	74	157	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.13E-18	95	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	96	156	IPR001356	Homeobox domain
SMART	SM00389	1.7E-15	98	160	IPR001356	Homeobox domain
CDD	cd00086	2.46E-16	100	157	No hit	No description
Pfam	PF00046	7.3E-16	100	154	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	131	154	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.0E-7	156	188	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.4E-16	156	199	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEVYDDRDDV QETALSLRLN YDGGSSHLST GDHPRPQAAT PVEPSLTLVL PSMACSVSGV 60 VGRMPSSHSV ISSISGGRPS KVKRENDGRI SDEEEDGAAR KKLRLTKEQS ALLEDKFKEH 120 ATLNPKQKQA LARQLNLRPR QVEVWFQNRR ARTKLKKTEV ECEFLRKCCE TLREENRRLL 180 QEIQELKSLD LQAPRYMHPP GGAAAGTFQT CPSCKNRDEG GSPAVAPKTR FFNPFAHSAA 240 Y

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416790.1	1e-180	PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X1
Swissprot	P46604	2e-61	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	M0TYY9	1e-179	M0TYY9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P09800_001	1e-180	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-63	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]