PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P10210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 241aa MW: 26895.9 Da PI: 8.4758

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P10210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.3e-52	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+d+elv++yL++k++g ++e +++ + +vd++k+ePwdLp+++ + +ewy Fs rd kyatg+r+nrat sgyWkatg GSMUA_Achr9P10210_001 9 LPPGFRFHPRDDELVCDYLAAKAAGGSTESSSImMVDVDLNKCEPWDLPAAACVGGNEWYLFSLRDLKYATGQRTNRATMSGYWKATG 96 79**********************9888777699*********7666789**************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kdk+v++ kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ GSMUA_Achr9P10210_001 97 KDKPVTR-KGLLVGMRKTLVFYQGRAPKGKKTKWVMHEFRM 136 **9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-59	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	53.301	9	159	IPR003441	NAC domain
Pfam	PF02365	5.4E-26	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MLSMVEAKLP PGFRFHPRDD ELVCDYLAAK AAGGSTESSS IMMVDVDLNK CEPWDLPAAA 60 CVGGNEWYLF SLRDLKYATG QRTNRATMSG YWKATGKDKP VTRKGLLVGM RKTLVFYQGR 120 APKGKKTKWV MHEFRMEGSD GAPKLPFKPD WALCRVFCNN RRISTMPSME ASHESSGSQS 180 LSALMDNCIT FGQTPFFSEG FEQVPCFSNL SPNYVSQCQD FVLTKCLAQT GGLPDHYLIR 240 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-48	4	157	12	163	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-48	4	157	12	163	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-48	4	157	12	163	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-48	4	157	12	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-48	4	157	15	166	NAC domain-containing protein 19
3swm_B	4e-48	4	157	15	166	NAC domain-containing protein 19
3swm_C	4e-48	4	157	15	166	NAC domain-containing protein 19
3swm_D	4e-48	4	157	15	166	NAC domain-containing protein 19
3swp_A	4e-48	4	157	15	166	NAC domain-containing protein 19
3swp_B	4e-48	4	157	15	166	NAC domain-containing protein 19
3swp_C	4e-48	4	157	15	166	NAC domain-containing protein 19
3swp_D	4e-48	4	157	15	166	NAC domain-containing protein 19
4dul_A	4e-48	4	157	12	163	NAC domain-containing protein 19
4dul_B	4e-48	4	157	12	163	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416748.1	1e-177	PREDICTED: NAC domain-containing protein 21/22-like isoform X2
Swissprot	Q84TE6	4e-84	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	M0TZ30	0.0	M0TZ30_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P10210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	2e-86	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]