PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P10300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 234aa    MW: 26019.1 Da    PI: 7.7172
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P10300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32127183158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq+Rak+e+++k+ +k rkpylheSRh hAl+R+Rg+gGrF
  GSMUA_Achr9P10300_001 127 EEPVYVNAKQYHGILRRRQSRAKAESKNKM-IKVRKPYLHESRHLHALKRARGCGGRF 183
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-36125186IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.774126186IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.2E-27128183IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23129151IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860131151IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-23160183IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MINSSNIFIK NLGNFEIMSL VYSLMILYDD FSGNREPGEQ QKHAEPEIRH EPTATTNLQY  60
GVETSLSEGT VPYSQFGVAQ TMAHSAYPYV DPSYGGIYAA YIGQPVIYPQ LIAIHQSGVP  120
LPTDAAEEPV YVNAKQYHGI LRRRQSRAKA ESKNKMIKVR KPYLHESRHL HALKRARGCG  180
GRFLNSKSEG NQQNEVASSD QDQPSSIPAL EKCFGTQENA NLSGDRVESN KVSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20127189264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417055.11e-151PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP16e-48NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLM0TZ391e-174M0TZ39_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P10300_0011e-174(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-50nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]